![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g37670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22611.2 Da PI: 10.242 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.3 | 7.2e-12 | 2 | 31 | 13 | 42 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f kR++ ++KKA+ELS+L +++++v+++++ LOC_Os03g37670.1 2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31 89**************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.886 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-11 | 2 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-14 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMVW PSVPEARRVI ERFRALPQKD 60 QYENTTNLEG FLKQRIANLQ EKVDKAKHEN DELETKLLLL NSLDCCLPSL VGLTVKQITS 120 LNSMVEERLK KLRGNGLLAT PVPTSSKKKI IWDVRYNLKA RYVTDDSAKN GSPRLRCTPA 180 TSSQRQSSPE FRHRRCLP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g37670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g37670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC093312 | 0.0 | AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879443.1 | 1e-103 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | Q10HW8 | 1e-121 | Q10HW8_ORYSJ; SRF-type transcription factor family protein | ||||
STRING | ORGLA03G0221500.1 | 1e-119 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27810.1 | 3e-16 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g37670.1 |