PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g31230.2
Common NameOsJ_11340
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 521aa    MW: 57625.9 Da    PI: 4.3366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g31230.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07336384247
                       SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       +rWT eE+ l++++v   ++      W+  +r ++ g+t  +++s+++++
  LOC_Os03g31230.2 336 QRWTDEEESLFYRVVYSNPPSlgknFWHFLPRALP-GKTSMELVSYYFNV 384
                       79**************988668888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0055334387IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-5336385IPR009057Homeodomain-like
CDDcd001673.08E-6337385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE  60
SKIASTGLKP GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA CKRPKQIDEN  120
TWSTSTFETS FSDLADETRE PDYIYHNSGI SACNTSSSIP YSNLEQLIGE ENLYLPDWVT  180
TFPGYTGDFW PAPVADQVDD IDSPIHDHLP RKAVAIGPDH QADIPEWRPR ISMTVPYGSG  240
SCADLSYSSV STSGSAPRDE DSESDKWIKH CVIEMPSSCS VAWVGDHGRD CGCSDEGSIR  300
CVRRHVLESR ENLKRIFGED KFRELGLCDM GEDIAQRWTD EEESLFYRVV YSNPPSLGKN  360
FWHFLPRALP GKTSMELVSY YFNVFMLRKR AQQNRSEPLH VDSDDDEVPD EPSVTEDEDS  420
AVESPAHDYY VNNPMSPESE DSFHEKVADS LSGLRDGPSQ KPLGSNTDNP GGDADVQDES  480
CTSFEDHNGA HGSNGVQCAE FHMMLPNAAL DHYSDRGACM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.74050.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856360.0
Expression AtlasB9F947-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g31230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g31230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004270.0AK100427.1 Oryza sativa Japonica Group cDNA clone:J023088D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631894.10.0uncharacterized protein LOC4333157
RefseqXP_015631895.10.0uncharacterized protein LOC4333157
TrEMBLB9F9470.0B9F947_ORYSJ; Uncharacterized protein
TrEMBLQ75GS60.0Q75GS6_ORYSJ; Expressed protein
STRINGOS03T0425800-010.0(Oryza sativa)