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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g27390.1 | ||||||||
Common Name | LOC4333025, Os03g0391700, OSJNBa0065F09.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34234 Da PI: 4.8912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.1 | 0.00018 | 264 | 303 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L LOC_Os03g27390.1 264 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 303 9******************97...333..3458999999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.597 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-7 | 264 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.53E-4 | 264 | 308 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-6 | 264 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSVALP TYLNSDGYIY SGVAASMPSI 60 AASVTDRPVS FSSRFVTTLV PSVGLSTAET LRKRPLVFFH NVNNTFTVGP LLSKGTLDTV 120 PELQGSNETN VTDVGAQNTE CMHENTEEID ALLCSDSDEG CLKVQELNNR VRKYPMQNDT 180 MSVESVASAG ASQPAKKRRL SSGTDRSVVD TASSARPDHS VDQKHLSHDD DAQSCCIGEV 240 ESDHQFALRE GEEAEGDDGP DDRKRRRERI QETVAALRKI VPGGIAKDAT AVLDEAICYL 300 KYLKLKVKTL GAVSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 266 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59384 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975692 | 0.0 | ||||
Expression Atlas | Q75KP4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g27390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g27390 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099323 | 0.0 | AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence. | |||
GenBank | AK065674 | 0.0 | AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631787.1 | 0.0 | transcription factor PIF4 | ||||
TrEMBL | I1PBY1 | 0.0 | I1PBY1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q75KP4 | 0.0 | Q75KP4_ORYSJ; Expressed protein | ||||
STRING | ORGLA03G0187700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10031 | 18 | 20 | Representative plant | OGRP12765 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g27390.1 |
Entrez Gene | 4333025 |