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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g25304.1 | ||||||||
Common Name | OsJ_10983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 19833.5 Da PI: 10.7563 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.7 | 8.3e-11 | 49 | 101 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +W +eEd l+++ ++ G ++W+++a+ m +R++ qc++rw+++l LOC_Os03g25304.1 49 AWMPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrPRRSPGQCRDRWRDHL 101 7*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.814 | 42 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-8 | 46 | 103 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-14 | 49 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-14 | 49 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00181 | 49 | 101 | No hit | No description |
Pfam | PF13921 | 9.9E-11 | 50 | 118 | No hit | No description |
PROSITE profile | PS50090 | 5.935 | 102 | 156 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MALQGMEQEA AGQPPASAAF PSSAEAAAAA ASPTSGGKRI VLRIRIPPAW MPEEDACLAR 60 LAAENGFRHW RRVAEGMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR 120 LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWCPPP PPMQPSC* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10KW0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g25304.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g25304 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC082644 | 0.0 | AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence. | |||
GenBank | AC144427 | 0.0 | AC144427.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAb0012F18, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 2e-58 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | Q10KW0 | 1e-122 | Q10KW0_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G19310.1 | 1e-122 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-06 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g25304.1 |