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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g20780.1 | ||||||||
Common Name | LOC4332697, Os03g0324200, OsEIL1, OSNPB_030324200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | EIL | ||||||||
Protein Properties | Length: 644aa MW: 71034.6 Da PI: 4.7025 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 509.5 | 1.5e-155 | 78 | 464 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaa..tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 eel++rmw+d+m+lkrlke ++++ +d + +k ++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+L LOC_Os03g20780.1 78 EELERRMWRDRMKLKRLKELQLSRGKDPAGGvvGDPSKPRQSQEQARRKKMSRAQDGILKYMLKMMEVCRAQGFVYGIIPEKGKPVSGASDNL 170 8*********************9885555448788999******************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS EIN3 92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184 r+WWkekv+fdrngpaai+kyqa+n++++ es+l + ++ ++hsl+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWPtG+e+ww+el LOC_Os03g20780.1 171 RGWWKEKVRFDRNGPAAIAKYQADNAVPGFESELAS-GTGSPHSLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPTGDEEWWPEL 262 **********************************66.******************************************************** PP T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXXXXX CS EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrkqsp 272 g++kdqg+ppykkphdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake ++l+v++qee+++ ++ + + +++ LOC_Os03g20780.1 263 GIPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELYLKLNPGARppaptGGITSAI 355 ******************************************************************************944345442233556 PP XXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX CS EIN3 273 kvtlsceqkedvegkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrg 336 ++++s++ ++dv++ ++ k ++ ++k+ ++++++kr + +e++ + +++v +tc++ q+++ LOC_Os03g20780.1 356 SFNASSS-EYDVDVVDDCKGDEAGNQKAVVvadptafnlgaamlndkflmpasmkeeatDVEFIQKRSASGAEPELMLNNRV-YTCHNVQCPH 446 6666655.99***77777777777777766888888*****************************************99976.********** PP .XXXXXXXXXXXXXXXXX CS EIN3 337 setelifadknsisqney 354 s++ +f d+n++++++y LOC_Os03g20780.1 447 SDYGYGFLDRNARNSHQY 464 ****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 9.5E-132 | 78 | 332 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.0E-74 | 207 | 340 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.09E-61 | 211 | 335 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MGGGLVMDQG MMFPGVHNFV DLLQQNGGDK NLGFGALVPQ TSSGEQCVMG EGDLVDPPPE 60 SFPDAGEDDS DDDVEDIEEL ERRMWRDRMK LKRLKELQLS RGKDPAGGVV GDPSKPRQSQ 120 EQARRKKMSR AQDGILKYML KMMEVCRAQG FVYGIIPEKG KPVSGASDNL RGWWKEKVRF 180 DRNGPAAIAK YQADNAVPGF ESELASGTGS PHSLQELQDT TLGSLLSALM QHCDPPQRRY 240 PLEKGVPPPW WPTGDEEWWP ELGIPKDQGP PPYKKPHDLK KAWKVSVLTA VIKHMSPDIE 300 KIRRLVRQSK CLQDKMTAKE ISTWLAVVKQ EEELYLKLNP GARPPAPTGG ITSAISFNAS 360 SSEYDVDVVD DCKGDEAGNQ KAVVVADPTA FNLGAAMLND KFLMPASMKE EATDVEFIQK 420 RSASGAEPEL MLNNRVYTCH NVQCPHSDYG YGFLDRNARN SHQYTCKYND PLQQSTENKP 480 SPPAIFPATY NTPNQALNNL DFGLPMDGQR SITELMNMYD NNFVANKNLS NDNATIMERP 540 NAVNPRIQIE EGFFGQGSGI GGSNGGVFED VNGMMQQPQQ TTPAQQQFFI RDDTPFGNQM 600 GDINGASEFR FGSGFNMSGA VEYPGAMQGQ QKNDGASEFE ELE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 6e-74 | 209 | 340 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 6e-74 | 209 | 340 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12691 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116010818 | 0.0 | ||||
Expression Atlas | Q8W3M0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots (PubMed:19798512). Expressed at low levels in leaves and panicles (PubMed:19798512). {ECO:0000269|PubMed:19798512}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:30002253}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g20780.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:19798512}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g20780 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB074971 | 0.0 | AB074971.2 Oryza sativa Japonica Group OsEIL1 mRNA for ethylene-insensitive-3-like protein, complete cds. | |||
GenBank | AC118674 | 0.0 | AC118674.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629857.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | Q8W3M0 | 0.0 | EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b | ||||
TrEMBL | A2XG63 | 0.0 | A2XG63_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0324200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP638 | 38 | 168 | Representative plant | OGRP563 | 16 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-165 | EIL family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g20780.1 |
Entrez Gene | 4332697 |
Publications ? help Back to Top | |||
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