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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g20550.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 201aa MW: 22720.4 Da PI: 8.4681 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.5 | 1.7e-20 | 23 | 84 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 +Dg++WrKYG K++++ +fpr YYrCt++ +Cp++k++++++ +dp + +tY +eH+++ LOC_Os03g20550.2 23 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 84 8***************************99999*******976538**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-23 | 10 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-22 | 16 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.686 | 17 | 86 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-31 | 22 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-24 | 23 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MFLKKTCRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY KDNMNCPATK 60 QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL SPSEFQLQTA SGKAVSICFE SSGAQEPMTN 120 ASSPSSSAAR RSTPSENKNQ PLPRHSEAYS WGVGVVEQKP SCTELQSCST ECQDAFSAGT 180 IPEETVDAGR FGSIRFFHFL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-14 | 23 | 83 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.33131 | 0.0 | callus| flower| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g20550.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g20550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101653 | 0.0 | AK101653.1 Oryza sativa Japonica Group cDNA clone:J033057D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631650.1 | 1e-145 | probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0D9Z6J3 | 1e-149 | A0A0D9Z6J3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G15660.1 | 1e-144 | (Oryza glumipatula) | ||||
STRING | ORUFI03G16080.1 | 1e-144 | (Oryza rufipogon) | ||||
STRING | OS03T0321700-01 | 1e-144 | (Oryza sativa) | ||||
STRING | ONIVA03G16490.3 | 1e-144 | (Oryza nivara) | ||||
STRING | OPUNC03G15030.5 | 1e-144 | (Oryza punctata) | ||||
STRING | ORGLA03G0148400.1 | 1e-144 | (Oryza glaberrima) | ||||
STRING | OBART03G15470.1 | 1e-144 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-19 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g20550.2 |