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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g13614.3 | ||||||||
Common Name | LOC4332201, Os03g0239400, OsJ_10083, OSNPB_030239400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 384aa MW: 41058.3 Da PI: 9.8085 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.6 | 3.6e-20 | 299 | 361 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+ LOC_Os03g13614.3 299 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 361 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.7E-29 | 1 | 100 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-17 | 139 | 267 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-15 | 294 | 357 | No hit | No description |
Pfam | PF00170 | 7.1E-18 | 299 | 361 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.0E-19 | 299 | 363 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 301 | 364 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.44E-9 | 302 | 358 | No hit | No description |
CDD | cd14702 | 1.19E-21 | 304 | 355 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 306 | 321 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGKGEVATRS KSQKSSATQN EQSTPTNPPT AYPDWSQFQA YYNPAGTAPM TPPGFFHPNV 60 APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM LPGSHPYNPY PGQSPNGTVQ 120 TPTSAGGTET DKSGKSKRKT PLKRSKGSLG NLDVVATKNK KAPAKPSASS SNEGSSHSES 180 GSGSSSEGSS TNSKSGSRTK DGSEHGQGND ASNKGATAQS SAVEPVQAST GPVVLNPMMP 240 YWPVPPPMAG PATGVNMGMD YWGTPTSVPM HNKVIAAPAS APSSNSRDVV LSDPAIQDER 300 ELKRQKRKQS NRESARRSRL RKQAEWEEVA NRADLLKQEN SSLKEELKQL QEKCNSLTSE 360 NTTLHEKLKE LEGEKSNGNW YKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 321 | RRSRLRK |
2 | 315 | 322 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19634 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976581 | 0.0 | ||||
Expression Atlas | Q10PC3 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g13614.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g13614 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066563 | 0.0 | AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632857.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_015632859.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_015632860.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_015632861.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_025879940.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_025879941.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Swissprot | Q501B2 | 1e-82 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A0D3FG05 | 0.0 | A0A0D3FG05_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GBH9 | 0.0 | A0A0E0GBH9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NS76 | 0.0 | A0A0E0NS76_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XED4 | 0.0 | A2XED4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P9B2 | 0.0 | I1P9B2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10PC3 | 0.0 | Q10PC3_ORYSJ; Os03g0239400 protein | ||||
STRING | ORUFI03G10140.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0239400-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA02G31320.1 | 0.0 | (Oryza nivara) | ||||
STRING | ONIVA03G10450.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA03G0095800.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G09980.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 4e-53 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g13614.3 |
Entrez Gene | 4332201 |
Publications ? help Back to Top | |||
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