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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g13400.1 | ||||||||
Common Name | LOC9270511, Os03g0237250, OSNPB_030237250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 439aa MW: 45959.7 Da PI: 10.1244 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.4e-07 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H LOC_Os03g13400.1 79 YVCEICGQGFQREQNLQMHRRRH 101 9*********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ LOC_Os03g13400.1 179 WVCARCAKGYAVQSDYKAHLKTC 201 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.38E-7 | 78 | 101 | No hit | No description |
SMART | SM00355 | 6.5E-4 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.759 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 143 | 173 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.38E-7 | 174 | 199 | No hit | No description |
SMART | SM00355 | 270 | 179 | 206 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD 60 PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG 120 GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV 180 CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA 240 TTLPVIRPAA LRHHHHHPPP PPPELQLLPA STTAPLAAAF SSNSTTTGSS SHEQHATTMT 300 TTKLQLSIGP AAVVAAASGG GGACAAAAGG EEEQQREEVR RALEEKTAAD AARERAREEA 360 AAAERALEDA RRARHRARGE LEKALALRDH AARLIAQVTC HACRQRSLAV MSMAAIDGHG 420 ASAVAREHLR GGGVGAGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-16 | 175 | 229 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 1e-16 | 175 | 229 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.80098 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116631343 | 0.0 | ||||
Expression Atlas | A0A0P0VV73 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g13400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g13400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837698 | 0.0 | CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence. | |||
GenBank | JQ681528 | 0.0 | JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629419.1 | 0.0 | protein indeterminate-domain 16 | ||||
Swissprot | Q9C9X7 | 1e-105 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A0P0VV73 | 0.0 | A0A0P0VV73_ORYSJ; Os03g0237250 protein | ||||
STRING | OS03T0237250-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 9e-88 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g13400.1 |
Entrez Gene | 9270511 |
Publications ? help Back to Top | |||
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