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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g13310.1 | ||||||||
Common Name | LOC107278453, OsJ_10063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 25320 Da PI: 10.5701 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 28 | 72 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd+ll ++v++ Gg++W Ia ++ gRt+k+c++rw+++l LOC_Os03g13310.1 28 GWSKEEDKLLRELVRKQGGKDWGVIATAFP-GRTDKSCRLRWRQHL 72 5*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 80 | 124 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++ Ed ++v++++ +G++ W+tIa+ ++ gR+++ +k+rw+++l LOC_Os03g13310.1 80 LPFSAGEDRKIVELHRVHGNR-WATIAAFLP-GRSDNAIKNRWNTHL 124 589999***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.335 | 21 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 25 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-17 | 25 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-29 | 25 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 28 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-16 | 29 | 72 | No hit | No description |
SMART | SM00717 | 4.9E-13 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-14 | 81 | 124 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.006 | 81 | 128 | IPR017930 | Myb domain |
CDD | cd00167 | 1.33E-12 | 81 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-21 | 81 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MALEGAAGGG GVGGGGGPPG QEAGKKVGWS KEEDKLLREL VRKQGGKDWG VIATAFPGRT 60 DKSCRLRWRQ HLDPSVDVAL PFSAGEDRKI VELHRVHGNR WATIAAFLPG RSDNAIKNRW 120 NTHLRKRHAQ DVQQRPSGGL ALGLGGGGGA GQAAGGKLTP VCLQLFPPTQ APPIGENLPG 180 PARSAVPELL KLFPLAPGDL KDNASAAAAM DVGNEAVRAL PELRLSPAAV VFDAMPLQAI 240 RM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 29 | 127 | 10 | 107 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10PF5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g13310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g13310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137696 | 0.0 | AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630256.1 | 1e-172 | transcription factor MYB1 | ||||
TrEMBL | A0A0D3FFY0 | 1e-171 | A0A0D3FFY0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GJC9 | 1e-171 | A0A0E0GJC9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NS47 | 1e-171 | A0A0E0NS47_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XEB4 | 1e-171 | A2XEB4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P989 | 1e-171 | I1P989_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10PF5 | 1e-171 | Q10PF5_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G09920.1 | 1e-172 | (Oryza rufipogon) | ||||
STRING | ONIVA03G10150.1 | 1e-172 | (Oryza nivara) | ||||
STRING | ORGLA03G0093500.1 | 1e-172 | (Oryza glaberrima) | ||||
STRING | OBART03G09760.1 | 1e-172 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-34 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g13310.1 |
Entrez Gene | 107278453 |