PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g12860.1
Common NameHOX19, LOC4332147, OJ1017C11.5, OJ1781E12.8, Os03g0231000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 293aa    MW: 30516.2 Da    PI: 8.418
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g12860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-18126180256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LOC_Os03g12860.1 126 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 180
                       788899***********************************************98 PP
2HD-ZIP_I/II125.23e-40126215191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  LOC_Os03g12860.1 126 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 215
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17113181IPR009057Homeodomain-like
SuperFamilySSF466891.11E-18119183IPR009057Homeodomain-like
PROSITE profilePS5007117.216122182IPR001356Homeobox domain
SMARTSM003892.1E-15124186IPR001356Homeobox domain
PfamPF000462.7E-15126180IPR001356Homeobox domain
CDDcd000868.17E-16126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PfamPF021836.9E-11182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-24182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAQEDVGHLS DAGLALGLSL GGGGGGTTDA AAAHRGGCRR PSPSSQCPPL EPSLTLSLPD  60
DAAAGAAATA TATASGGGGP AHSVSSLSVG AAAAAAVKRE RAEEADGERV SSTAAGRDDD  120
DDGSTRKKLR LTKEQSALLE DRFREHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKRCCETLTE ENRRLQRELQ ELRALKFAPP PPSSAAHQPS PAPPAPFYMQ  240
LPAATLTICP SCERVGGPAS AAKVVAADGT KAGPGRTTTH HFFNPFTHSA AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130TRKKLRL
2174182RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.497541e-111panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO462426021e-111
Expression AtlasQ8GRL4-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g12860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g12860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1059270.0AC105927.2 Oryza sativa Japonica Group chromosome 3 clone OJ1781E12, complete sequence.
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627844.10.0homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE760.0HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL40.0HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0D9Z4B90.0A0A0D9Z4B9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GEI40.0A0A0E0GEI4_ORYNI; Uncharacterized protein
STRINGOGLUM03G09500.10.0(Oryza glumipatula)
STRINGONIVA02G39180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-56homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]