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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g12370.2 | ||||||||
Common Name | HSF09, HSF8, HSFA9, LOC4332113, Os03g0224700, OsJ_009601, OSJNBa0081P02.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 407aa MW: 45052.1 Da PI: 4.8803 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.6 | 1.7e-32 | 51 | 142 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++++isw e g sfv++d++ f++ L+++Fkhsnf+SF+RQLn+YgF+kv+ ++ we++++ F g+k+ll LOC_Os03g12370.2 51 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLL 133 9************************************.8**************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++ikr+k++ LOC_Os03g12370.2 134 KTIKRRKKS 142 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-33 | 43 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-30 | 47 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.3E-50 | 47 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.0E-28 | 51 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-16 | 51 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-16 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 89 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-16 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGSKKRSPQH PAAAAPPPAV GGGGGGEVSG DGGASTANGP VVPKPSEVAP FLTKVYDMVS 60 DPATDNVISW AEGGGSFVIW DSHAFERDLH RHFKHSNFTS FIRQLNTYGF RKVHPDRWEW 120 ANEGFIMGQK HLLKTIKRRK KSSQESPSEI QKAPVKTAPG TENIEIGKYG GLEKEVETLK 180 RDKALLMQQL VDLRHYQQTS NLEVQNLIER LQVMEQNQQQ MMALLAIVVQ NPSFLNQLVQ 240 QQQQQRRSNW WSPDGSKKRR FHALEQGPVT DQETSGRGAH IVEYLPPVPE TSGQVNPVEG 300 AICSANSQPV PSPAVATPMD MQTSNVADTL GSSEEPFADN STLHEWDDND MQLLFDDNLD 360 PILPPFENDG QMGPPLSVQD YDFPQLEQDC LMEAQYNSNN PQYGND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | LKTIKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.40020 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982594 | 0.0 | ||||
Expression Atlas | Q10PR4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g12370.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g12370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344490 | 0.0 | AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633341.1 | 0.0 | heat stress transcription factor A-9 | ||||
Swissprot | Q10PR4 | 0.0 | HSFA9_ORYSJ; Heat stress transcription factor A-9 | ||||
TrEMBL | A2XE34 | 0.0 | A2XE34_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0224700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 4e-72 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g12370.2 |
Entrez Gene | 4332113 |
Publications ? help Back to Top | |||
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