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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g09280.2 | ||||||||
Common Name | LOC4331920, Os03g0193000, OsJ_09743, OSNPB_030193000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 536aa MW: 59647.9 Da PI: 6.2584 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 418.6 | 5.5e-128 | 167 | 535 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++++ +c +av++++ + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e + s e +++++l++e++P++kf+ LOC_Os03g09280.2 167 KQVIAACGKAVDENS-WYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SFELMSYMHLLYEICPFFKFG 255 677888999998854.4568899*********************************************9...99999**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 ++ aN aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s + l +g+rL ++A+++g+pfefn+ v + LOC_Os03g09280.2 256 YMSANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAA 347 *******************************************************8888889999***********************.7999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++ le+L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++ pr+ LOC_Os03g09280.2 348 SHEVMLEHLDIRSGEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRD 440 99999**************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +++ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF+p+pls +++++k ll ++s y++ee++g+l+lgWk+r+Lv+ S LOC_Os03g09280.2 441 DKKRISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSS 532 *******************************************************************66.*********************** PP GRAS 372 aWr 374 aWr LOC_Os03g09280.2 533 AWR 535 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.845 | 140 | 516 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-125 | 167 | 535 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MSMQASNRPY RYPDNSQIPY YSRSSMHVGQ NGTYHVQQNH EDLYASSDDG SQNGNSKAQG 60 LQAQYCTLDS SSGNFVYPAH SSTSSHISGS PISQQDSHSE HTSGSPASAS CVTEVPGLRF 120 TTIEEIENAM FGPEPDTVSS DCSLLTDSAF YQDNWREHLG INTGDLKQVI AACGKAVDEN 180 SWYRDLLISE LRNMVSISGE PMQRLGAYML EGLVARLSST GHALYKSLKC KEPTSFELMS 240 YMHLLYEICP FFKFGYMSAN GAIAEAVKGE NFVHIIDFQI AQGSQWATMI QALAARPGGP 300 PYLRITGIDD SNSAHARGGG LDIVGRRLFN IAQSCGLPFE FNAVPAASHE VMLEHLDIRS 360 GEVIVVNFAY QLHHTPDESV GIENHRDRIL RMVKGLSPRV VTLVEQEANT NTAPFFNRYL 420 ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERVER HEPFGKWRAR 480 LSMAGFRPYP LSALVNNTIK KLLDSYHSYY KLEERDGALY LGWKNRKLVV SSAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-58 | 163 | 535 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5252 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983409 | 0.0 | ||||
Expression Atlas | Q10QK3 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g09280.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g09280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC116604 | 0.0 | AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence. | |||
GenBank | AC150751 | 0.0 | AC150751.1 Oryza sativa Japonica Group chromosome 3 clone OSJNOa0279P04, complete sequence. | |||
GenBank | AK073386 | 0.0 | AK073386.1 Oryza sativa Japonica Group cDNA clone:J033041E22, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630858.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630859.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630860.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630861.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630862.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015630863.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_025879855.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | B8AQ19 | 0.0 | B8AQ19_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q10QK3 | 0.0 | Q10QK3_ORYSJ; Chitin-inducible gibberellin-responsive protein 2, putative, expressed | ||||
STRING | OS03T0193000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g09280.2 |
Entrez Gene | 4331920 |
Publications ? help Back to Top | |||
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