![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g09100.1 | ||||||||
Common Name | LOC4331903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1030aa MW: 115006 Da PI: 5.8034 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.7 | 3e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +f LOC_Os03g09100.1 20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINF 112 55599**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhylevk LOC_Os03g09100.1 113 QRRSYWMLEEDYMHIVLVHYLEVK 136 *********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.727 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.2E-76 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.6E-48 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.2E-7 | 440 | 525 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 5.6E-8 | 442 | 517 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.57E-17 | 442 | 527 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 0.00344 | 442 | 529 | No hit | No description |
SuperFamily | SSF48403 | 8.71E-17 | 631 | 735 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.3E-18 | 633 | 739 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.19E-13 | 638 | 732 | No hit | No description |
PROSITE profile | PS50088 | 8.763 | 640 | 672 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.059 | 640 | 744 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.013 | 673 | 702 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.843 | 673 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1400 | 712 | 741 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.78E-8 | 844 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.075 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0033 | 848 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 870 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 872 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1030 aa Download sequence Send to blast |
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQASHADSPL SQLPSQTTEG ESSVSGQASE 180 YDETESDIYS GGARYNSFSR MRQHENGGGS VIDDSIFSSY VPASSVGSYQ GLQATAPNTG 240 FYSHGQDNLP VVLNESDLGT AFNGPNSQFD LSLWIEAMKP DKGTHQIPLY QAPVPSEQSP 300 FTGGPGIESF TFDEVYNNGL SIKDVDGDDT DGETPWQIPN ASGTFATADS FQQNDKTLEE 360 AINYPLLKTQ SSSLSDIIKD SFKKNDSFTR WMSKELAEVD DSQITSSSGV YWNSEEADNI 420 IEASSSDQYT LGPVLAQDQL FTIVDFSPTW TYAGSKTRVF IKGNFLSSDE VKRLKWSCMF 480 GEFEVPAEII ADDTLVCHSP SHKPGRVPFY VTCSNRLACS EVREFDFRPQ YMDAPSPLGS 540 TNKIYLQKRL DKLLSVEQDE IQTTLSNPTK EIIDLSKKIS SLMMNNDDWS ELLKLADDNE 600 PATDDKQDQF LQNRIKEKLH IWLLHKVGDG GKGPSMLDEE GQGVLHLAAA LGYDWAIRPT 660 IAAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP GAVTDPTPSF PSGSTPADLA 720 SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAGEISGL PGIVNVADRS ASPLAVEGHQ 780 TGSMGDSLGA VRNAAQAAAR IYQVFRMQSF QRKQAVQYED ENGAISDERA MSLLSAKPSK 840 PAQLDPLHAA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH VRGHQVRKHY RKIIWSVGIV 900 EKVILRWRRR GAGLRGFRPT ENAVTESTSS SSGNVTQNRP AENDYDFLQE GRKQTEERLQ 960 KALARVKSMV QYPDARDQYQ RILTVVTKMQ ESQAMQEKML EESTEMDEGL LMSEFKELWD 1020 DDMPTPGYF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.13903 | 0.0 | callus| flower| leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32976669 | 0.0 | ||||
Expression Atlas | Q10QM9 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g09100.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g09100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066651 | 0.0 | AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631249.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X2 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | Q10QM9 | 0.0 | Q10QM9_ORYSJ; Anther ethylene-upregulated protein ER1, putative, expressed | ||||
STRING | OS03T0191000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 | Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g09100.1 |
Entrez Gene | 4331903 |
Publications ? help Back to Top | |||
---|---|---|---|
|