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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g08470.2 | ||||||||
Common Name | LOC4331845, Os03g0183000, OSJNBa0032G08.15, OSNPB_030183000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 35760.5 Da PI: 6.0764 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f t+eeAa+a++ +++l+g LOC_Os03g08470.2 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 159 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 109 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-38 | 110 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-22 | 110 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.37E-28 | 110 | 169 | No hit | No description |
PROSITE profile | PS51032 | 23.446 | 110 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-12 | 110 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAARG KSKSKRQQRS FADVDDFEAA 60 FEQFDDDSDF DDAEEEDEGH FVFASKSRVV AGHDGRAAAR AASKKKRGRH FRGIRQRPWG 120 KWAAEIRDPH KGTRVWLGTF NTPEEAARAY DVEARRLRGS KAKVNFPATP AAARPRRGNT 180 RATAVPPPAT APAAAPPRGL KREFSPPAET ALPFFTNGFV DLTTAAAPPP AMMMTSSFTD 240 SVATSESGGS PAKKARSDDV DSSEGSVGGG SDTLGFTDEL EFDPFMLFQL PYSDGYESID 300 SLFAAGDANS ANTDMNAGVN LWSFDDFPID GALF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 107 | 167 | 2 | 63 | ATERF1 |
3gcc_A | 8e-22 | 107 | 167 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6458 | 0.0 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117228600 | 0.0 | ||||
Expression Atlas | Q10QU5 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g08470.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g08470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU837258 | 0.0 | EU837258.1 Oryza sativa Japonica Group clone KCS050F04 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630585.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D3FEN5 | 0.0 | A0A0D3FEN5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NQL8 | 0.0 | A0A0E0NQL8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10QU5 | 0.0 | Q10QU5_ORYSJ; AP2 domain containing protein | ||||
STRING | ORUFI03G05890.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0183000-02 | 0.0 | (Oryza sativa) | ||||
STRING | OBART03G06060.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 2e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g08470.2 |
Entrez Gene | 4331845 |
Publications ? help Back to Top | |||
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