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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g06930.1 | ||||||||
Common Name | OJ1123F12.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 601aa MW: 63422.1 Da PI: 6.6401 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 352 | 389 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + LOC_Os03g06930.1 352 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 389 554459******************************88 PP | |||||||
2 | BELL | 111.9 | 3.6e-36 | 213 | 283 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai q LOC_Os03g06930.1 213 ERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAARPYTALALQTISRHFRSLRDAIGAQ 283 799*****************************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.4E-49 | 140 | 282 | IPR006563 | POX domain |
Pfam | PF07526 | 4.3E-48 | 145 | 280 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 330 | 393 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.38E-12 | 333 | 394 | No hit | No description |
SMART | SM00389 | 1.7E-9 | 333 | 397 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 334 | 400 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 336 | 399 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.7E-17 | 350 | 389 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MATFFSSSTN QRDLTGGGGD GGDMSFQHYP PPSNPYSDSS AGGLIPLPAS IVSHSHIAHG 60 GGDEPAAFRE AATADGGEMG LQTQLLMAHG AAARGHQGGL SLSLGTQVPV SLYQYRPAGM 120 AAASLLSPSQ SSPMAGRSAQ NSIYVQNSRF LRAARELLDE VVNVRDAIKR KGDKNQGKDS 180 GECKGGDAAG DDKAGSNPQE QESNSAPELS PSERQDLQNK VTALMAMLDQ VDRRYRHYHH 240 QMQIVMSSFD AVAGGGAARP YTALALQTIS RHFRSLRDAI GAQAQAARRG LGEQDASAQG 300 GGGLSRLRYI DQQLRQQRAM QQFGMMQQPQ HAWRPQRGLP ESAVSVLRAW LFEHFLHPYP 360 KDSEKLMLAR QTGLSRGQVS NWFINARVRL WKPMIEEMYK EEFGAEMDSN SSSENGGGGG 420 GKGKDEAISS EDRDEFQSPS SAAAARHAGV AGQLNNPFKS EAMGGAALDV GVGVVGLSSC 480 LGGAMGTYAT GLNLNHHVHH PGAGGTSLLH DALHHHHHGG GGDARFVSYG DMADLGGGGG 540 YDGGSVSLTL GLQHCNNAGP VPAEQQGLLY GSAGDFDYIN GSDDRQRFGP ASQLLHDFVA 600 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-17 | 339 | 397 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-17 | 339 | 397 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 1e-17 | 339 | 397 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 339 | 397 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100067 | 0.0 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985038 | 0.0 | ||||
Expression Atlas | Q8S5U8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g06930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g06930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068034 | 0.0 | AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630993.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_025879612.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | O65685 | 1e-112 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | Q8S5U8 | 0.0 | Q8S5U8_ORYSJ; Putative homeodomain protein | ||||
STRING | OS03T0165300-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 2e-90 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g06930.1 |
Publications ? help Back to Top | |||
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