![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g06630.2 | ||||||||
Common Name | HSF08, HSF7, HSFA2D, OJ1607A12.12, Os03g0161900, OsJ_009160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 360aa MW: 41134.6 Da PI: 6.9769 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101 | 1.1e-31 | 38 | 128 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++ll LOC_Os03g06630.2 38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANDGFLRGQRHLL 121 9****************************************************************999.........**************** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 + ikr++ LOC_Os03g06630.2 122 KMIKRRR 128 *****97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.1E-36 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.5E-57 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-34 | 34 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-18 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-18 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.4E-18 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA 60 GSSFVVWDPH VFAAVFLPRF FKHNNFSSFV RQLNTYGFRK IDPDRWEFAN DGFLRGQRHL 120 LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR DKNILLAEVV KLRHKQQSTK 180 ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ QDKMKGLEDT FSKKRTRSID 240 IVPFLNPGEV SQGDQLESTL LFDPRPFAEL NDEPAKSELE NLALNIQGLG KGKQDVNRTR 300 NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP RYVDALAQKL GYLSNSSQK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5hdg_A | 3e-24 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-24 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-24 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-24 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-24 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 120 | 126 | LKMIKRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.40021 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32976862 | 0.0 | ||||
Expression Atlas | Q8H7Y6 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g06630.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
IntAct | Search Q8H7Y6 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g06630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC105729 | 0.0 | AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence. | |||
GenBank | AK066844 | 0.0 | AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY344489 | 0.0 | AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649439.2 | 0.0 | PREDICTED: heat stress transcription factor A-2d | ||||
Swissprot | Q8H7Y6 | 0.0 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | A0A0D3FE47 | 0.0 | A0A0D3FE47_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GH51 | 0.0 | A0A0E0GH51_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G04400.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART03G04630.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-102 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g06630.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|