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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g05480.1 | ||||||||
Common Name | LOC4331626, Os03g0148800, OsJ_09416, OSJNBb0050N02.7, OSNPB_030148800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 652aa MW: 69511.6 Da PI: 5.3218 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 540 | 565 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C ++F+++ +L +H ++ + LOC_Os03g05480.1 540 FQCEidYCRMTFKNRAELSVHKKNtC 565 89*******************99866 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 565 | 587 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg++F+++ +L+rH++ H LOC_Os03g05480.1 565 CTvkSCGRHFRSHKYLRRHQSIH 587 88889***************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 16 | 540 | 562 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.42 | 563 | 587 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.009 | 563 | 592 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 564 | 587 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 565 | 587 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.68E-9 | 579 | 621 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-10 | 588 | 614 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.887 | 593 | 622 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 593 | 617 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 595 | 617 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.08E-7 | 612 | 646 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-7 | 615 | 645 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 39 | 623 | 645 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MRIRRYAARL LASSTATAPS SLPPPPAASA AWCHAAADDC AICDLTRSAS PQVVAPDAIK 60 QKGHIAGRAL EPELRSDPRV GLAERTPVPE DQGRDIDDGP PAKRSLTFTD AAARLEGSGN 120 VGAGVATEPA ARLGAPVANG AVSGQEDRAA TCLADESAAE LIATGVTSLV TGATAEPEVL 180 KGASFANTNV TEPRVSERVP LVREAATEPE AEVSMREVTE GALPDGEGAA KLEITGGLSR 240 ESADKMEVTK GISLVTEASA DSELAQRVPT EPGVELSLPE VTERVPVVTE DFTELGDTFS 300 GLHITGFASL DNEGSVEQEV TGSGSLVNEA TEMEVKEGTC IFTRVATELG DTGRVSACSG 360 DGDIALDEPR PPDCVSEVAN VNVGNAGEAV ASKVQPFRDN AESVGGSINS TGNGHVSSKS 420 PTADEAAPPG GCTDTPSVSC LSDIVARSIG KSGRTDIICY VRRRGKRKLE MVEVKEENVE 480 MDDSAICDQY DDKVASERTG PCESVTSTAV SVEIKIADIK RELEDNSTAS KGKKKRAKRF 540 QCEIDYCRMT FKNRAELSVH KKNTCTVKSC GRHFRSHKYL RRHQSIHNDD MPYKCPWEGC 600 SMAFKWSWDR GEHFQVHAGK RPYKCTTPGC SKIYKFVSDF TRHKRRCKPQ R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 4e-43 | 540 | 646 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 4e-43 | 540 | 646 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 4e-43 | 540 | 646 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 461 | 467 | RRRGKRK |
2 | 461 | 468 | RRRGKRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8301 | 0.0 | flower| leaf| panicle| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978828 | 0.0 | ||||
Expression Atlas | Q8H084 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g05480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g05480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068803 | 0.0 | AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632116.1 | 0.0 | uncharacterized protein LOC4331626 | ||||
TrEMBL | A0A0E0NPQ5 | 0.0 | A0A0E0NPQ5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q8H084 | 0.0 | Q8H084_ORYSJ; Os03g0148800 protein | ||||
STRING | ORUFI03G03520.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0148800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11491 | 32 | 41 | Representative plant | OGRP11981 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 5e-41 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g05480.1 |
Entrez Gene | 4331626 |