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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g03000.1 | ||||||||
Common Name | OJ1126B12.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 30711.1 Da PI: 9.9644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.1e-14 | 115 | 166 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ LOC_Os03g03000.1 115 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 166 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-15 | 106 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-14 | 113 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.78E-12 | 113 | 166 | No hit | No description |
PROSITE profile | PS50888 | 15.142 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEQWAAAAAA DQAAASAGAG QMPFLALLHG AMEADGGGGG DGRKRHAAAA AFASCCPCPP 60 VADLDLLESC VTQAAAPPVT APATRAERRR KRPRPRPRAA PPPEKRKKPE EAENQRMTHI 120 AVERNRRRLM NDHLASLRSL IPSNYIPRGD QATVVGGAID YVKQLEQQLV ALQAAAAERS 180 GVGVVAAAAT AASDGVFVSP QYTSYSEARG GSGVDVEATA AVGGHVRVRV AGRRWTGRLV 240 RAVAAMEDLR LTVLHLAVTS VGHDAVVYCF NLKVKTTTTL HHLLLHVPSF F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 97 | RRRKRPRPRPR |
2 | 89 | 95 | RKRPRPR |
3 | 89 | 107 | RKRPRPRPRAAPPPEKRKK |
4 | 90 | 94 | KRPRP |
5 | 115 | 126 | RMTHIAVERNRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8H8H9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g03000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g03000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098695 | 0.0 | AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629439.2 | 0.0 | transcription factor bHLH57 | ||||
TrEMBL | Q8H8H9 | 0.0 | Q8H8H9_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | ORGLA03G0015000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 | Representative plant | OGRP14170 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g03000.1 |