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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g02160.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 816aa MW: 87735.3 Da PI: 4.44 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 7e-07 | 795 | 815 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G++C++ H+ LOC_Os03g02160.2 795 ICK-FHENGYCRKGASCNYLHP 815 799.9999*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.126 | 790 | 815 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 792 | 814 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 795 | 815 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK LPSQRITRDV 60 PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP ATPVEDRGSS 120 SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV NQSPQSKILP 180 ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP PISGSKEISP 240 QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP ECPSPPQIPE 300 SKELSRQSKI LPESSPGNQD IEPECPSPPQ IPESKELSQQ SKILPESSPD NHDIKCEYSS 360 PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL SESYLDNQDV 420 ERECPSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST LAGDDALKSV 480 FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE SLMEQSCGTF 540 YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS VGSSLWGVQD 600 DDPIGNIWPL SSQAPALQYS SAGSTAHFID EATVTHGNNG VVLSSTPGEE VNPETNDASV 660 SMIDKNSGLV DSQPSANDGS DVGTARNTNH NTNLSLNHET AVPLSRSSGE ASRKHGFITD 720 LNVATSEEAL GNTKNWNPYA GNANRGSQRN HHRDRYSQIS ESWLLSSNYS RSRSDGFGTG 780 GSSRSTPRGQ TQRGICKFHE NGYCRKGASC NYLHP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9553 | 0.0 | callus| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988758 | 0.0 | ||||
Expression Atlas | Q10SS4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g02160.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g02160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ828863 | 0.0 | JQ828863.1 Oryza sativa Japonica Group cultivar Kita-ake CCCH-type zinc finger protein (Ehd4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630499.1 | 0.0 | zinc finger CCCH domain-containing protein 20 isoform X1 | ||||
Swissprot | Q0DVU4 | 0.0 | C3H20_ORYSJ; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | Q10SS4 | 0.0 | Q10SS4_ORYSJ; Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed | ||||
STRING | ORUFI03G00760.2 | 0.0 | (Oryza rufipogon) |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g02160.2 |
Publications ? help Back to Top | |||
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