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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g01870.1 | ||||||||
Common Name | LOC4331342, Os03g0109000, OsJ_09117, OSNPB_030109000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 34032 Da PI: 6.0358 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.6 | 1.2e-49 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deelv +yL++k ++++ + +++++ evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk+ LOC_Os03g01870.1 23 LPPGFRFHPSDEELVGYYLRNKQQQQQqqTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKP 115 79********************99998433334569**************88888999*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +l+ ++ g +ktLvfy+grap+g+kt Wvmhe+rl LOC_Os03g01870.1 116 ILH--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 150 **9..7789**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-57 | 11 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.11 | 23 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDGLISDDSM MMGGEVRAIE SRLPPGFRFH PSDEELVGYY LRNKQQQQQQ QTAATSMLVE 60 VDLHACEPWD LPEVAKVGSD EWYFFSWRER KYATGWRRNR ASKQGYWKAT GKDKPILHPT 120 VAGARKTLVF YSGRAPNGRK TAWVMHEFRL LHHHHHPNPN IQNMQQQEGD DWVLCRVFRK 180 GNNSNGQPLA TSSPPAHHLV ESLISSPAPT IMSDHDRLFT IQLPHHQHCD EQYFFLDDDE 240 QHQQQLLDLS VLQAPTSFES EQAPGHGGME INIAEMESFD TTCAALQDAS DYCMQLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 20 | 182 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.34712 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980440 | 0.0 | ||||
Expression Atlas | Q10SW5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g01870.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g01870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070416 | 0.0 | AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629924.1 | 0.0 | NAC transcription factor 32 | ||||
Swissprot | Q84TE6 | 9e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0NNK7 | 0.0 | A0A0E0NNK7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q10SW5 | 0.0 | Q10SW5_ORYSJ; NAC-domain containing protein 21/22, putative, expressed | ||||
STRING | ORUFI03G00490.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0109000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16917 | 12 | 12 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-60 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g01870.1 |
Entrez Gene | 4331342 |