PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g58440.1
Common NameLOC4331248, OJ1149_C12.8, Os02g0831100, OsJ_008677
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 648aa    MW: 71469.2 Da    PI: 5.1271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g58440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06113134426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C +f++ G C  GdrC F H 
  LOC_Os02g58440.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134
                       69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-41644IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6381645IPR000571Zinc finger, CCCH-type
PfamPF156632.7E-111771No hitNo description
PROSITE profilePS5010311.0284773IPR000571Zinc finger, CCCH-type
SMARTSM003562.54972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554109136IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4114133IPR000571Zinc finger, CCCH-type
PfamPF146081.6114133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RAGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS PGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD  360
RHRQRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFQPEDD VVYGDSLSPA DDIAAEAADD ASRELEEQQD  600
VETAEEYDYE MDDVNAAEEN DYQEYEDEDD DLEDDDDFAR KVGVMIT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.815200.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329706180.0
Expression AtlasQ6K977-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g58440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g58440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0NNB00.0A0A0E0NNB0_ORYRU; Uncharacterized protein
STRINGORUFI02G40020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]