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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g51090.1 | ||||||||
Common Name | LOC107276758, OJ1118_G04.12, OJ1734_E02.39, Os02g0744950, OsJ_08362, OSNPB_020744950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Nin-like | ||||||||
Protein Properties | Length: 233aa MW: 27394.9 Da PI: 5.638 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.4 | 1.1e-26 | 113 | 163 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl LOC_Os02g51090.1 113 EKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 163 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.36 | 95 | 184 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-22 | 115 | 163 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEKWRFYGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT 60 LFDGDILSIW GDMKEDAYHR SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGEKTLTFEL 120 VSQYFCLPIK QAAQELNVGL TLLKRRCRVL GIPRWPHRKV KSLETIIKNV QELGMETGQD 180 EDNTRNAVEM LQQTKKLIEQ SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 226 | KRRRL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6Z2T5 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g51090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g51090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004114 | 0.0 | AP004114.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1118_G04. | |||
GenBank | AP005297 | 0.0 | AP005297.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1734_E02. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627113.1 | 1e-174 | protein RKD1 | ||||
Refseq | XP_015627115.1 | 1e-174 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 2e-40 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | Q6Z2T5 | 1e-172 | Q6Z2T5_ORYSJ; Os02g0744950 protein | ||||
STRING | OGLUM02G32960.1 | 1e-173 | (Oryza glumipatula) | ||||
STRING | ORUFI02G34010.1 | 1e-173 | (Oryza rufipogon) | ||||
STRING | ONIVA06G04700.1 | 1e-173 | (Oryza nivara) | ||||
STRING | ORGLA02G0278600.1 | 1e-173 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 8e-43 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g51090.1 |
Entrez Gene | 107276758 |