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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49880.1 | ||||||||
Common Name | LOC4330626, Os02g0731700, OSNPB_020731700, P0617A09.30-1, P0643A10.2-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 453aa MW: 49240.9 Da PI: 6.2643 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.5 | 2.7e-08 | 17 | 58 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ LOC_Os02g49880.1 17 ARACDSCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 58 578*****************************6567777776 PP | |||||||
2 | CCT | 69.6 | 7.8e-24 | 399 | 442 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ LOC_Os02g49880.1 399 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRP 442 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-11 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 18 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.05E-8 | 20 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.122 | 399 | 441 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.1E-18 | 399 | 441 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MSCSSEKAAG AVGGKAARAC DSCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERL 60 RLRVSSPPPL TARASVEEEA AAAVGTTTTT TSKREGGVTP AWSKRKARTR RPQVKSVGQL 120 LSRRLVVPEM AVESSDERKA DEDGAHEELE GQLLYRVPVF DPSLAEFCSP PPIDDAAAAS 180 SSCFKEDAAD GAVEDAKYPA AAASSPVQQL PDSFVNFEPT DAELREFAAD MEALLGQGLD 240 DSNELQDSFY METLGLITPP VEESGRVKME LDGGVASNSR VSLPSCRAHP KPEDVESADV 300 LDIDFNCTSP DEQKSSASNG AAADSQFFHR SLDLRLNYEA IIESWGNSPW TDGRPPHGQL 360 DDFWPNDHHY SGLWAAGGGG HGAEVGMMTV RPRMDGPGRE ARVTRYREKR RTRLFSKKIR 420 YEVRKLNAEK RPRMKGRFVK RPSAAAAPCA VT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 425 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50246 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989937 | 0.0 | ||||
Expression Atlas | Q6Z2L0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120314 | 0.0 | AK120314.1 Oryza sativa Japonica Group cDNA clone:J013055L13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622659.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A0D3FA36 | 0.0 | A0A0D3FA36_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P3X6 | 0.0 | I1P3X6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6Z2L0 | 0.0 | Q6Z2L0_ORYSJ; Os02g0731700 protein | ||||
STRING | OS02T0731700-02 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA02G0268200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G31320.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3283 | 30 | 58 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-54 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49880.1 |
Entrez Gene | 4330626 |