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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g49370.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YB | ||||||||
Protein Properties | Length: 179aa MW: 19254.3 Da PI: 6.9114 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 76.7 | 3.5e-24 | 2 | 50 | 49 | 97 |
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ea+++cqre+rkti+++d+lwa++ lGf+dyvepl vyl++yre+ege+ LOC_Os02g49370.2 2 EANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLGVYLHRYREFEGES 50 9*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-20 | 2 | 52 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.35E-17 | 2 | 58 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-5 | 2 | 24 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-7 | 7 | 25 | No hit | No description |
PRINTS | PR00615 | 1.8E-7 | 26 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEANERCQRE QRKTITAEDV LWAMSRLGFD DYVEPLGVYL HRYREFEGES RGVGVGVGAA 60 RGDHHHGHVG GMLKSRAQGS MVTHHDMQMH AAMYGGGAVP PPPHPPPHHH AFHQLMPPHH 120 GQYAPPYDMY GGEHGMAAYY GGMYAPGSGG DGSGSSGSGG AGTPQTVNFE HQHPFGYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-25 | 2 | 45 | 54 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8891 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993070 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g49370.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g49370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288036 | 0.0 | AB288036.1 Oryza sativa Japonica Group OsHAP3E mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK107861 | 0.0 | AK107861.1 Oryza sativa Japonica Group cDNA clone:002-134-B07, full insert sequence. | |||
GenBank | AP004179 | 0.0 | AP004179.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1124_G07. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624920.1 | 1e-126 | nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | Q6YNJ7 | 1e-125 | Q6YNJ7_ORYSI; HAP3 transcriptional-activator | ||||
STRING | OGLUM02G31550.1 | 1e-126 | (Oryza glumipatula) | ||||
STRING | ORUFI02G32540.1 | 1e-126 | (Oryza rufipogon) | ||||
STRING | OS02T0725700-01 | 1e-126 | (Oryza sativa) | ||||
STRING | ONIVA02G33960.1 | 1e-126 | (Oryza nivara) | ||||
STRING | ORGLA02G0264000.1 | 1e-126 | (Oryza glaberrima) | ||||
STRING | OBART02G30860.1 | 1e-126 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-27 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g49370.2 |