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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g47660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 38638.6 Da PI: 7.3379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.1e-09 | 174 | 221 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq LOC_Os02g47660.1 174 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 221 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.82E-10 | 168 | 225 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-17 | 168 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 170 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 174 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LASMCYGSLG 60 GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSICKR QRGKQQQQQQ PCHPDQMAAA 120 VGKGRPERAR PGAKKKAEVA SPKDSPATSA STVTAGQKTD YIHVRARRGQ ATDSHSLAER 180 VRRERISERM RYLQELVPGC NKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF 240 NIVEDLFGRQ LSQAACNPAA LPAMALPMAQ VEPSCLQMSP LQQMQTSAGS SGYGLEMVVS 300 NQYSPPGGPM SVPAGASVEP CLNVNGAAGW DIGSHGLFSG FDAPFQSVQS DCLLDNLKME 360 M* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7751 | 1e-152 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992247 | 1e-152 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g47660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g47660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119183 | 0.0 | AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627481.1 | 0.0 | transcription factor bHLH63 | ||||
TrEMBL | A0A0D3F9G4 | 0.0 | A0A0D3F9G4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GBW2 | 0.0 | A0A0E0GBW2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G32260.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART02G29490.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-36 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g47660.1 |