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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g45054.2 | ||||||||
Common Name | LOC4330280, OJ1493_H11.12, Os02g0672100, OsJ_07891, OSNPB_020672100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 23171.5 Da PI: 10.2682 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.8e-06 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H LOC_Os02g45054.2 95 FVCEVCNKGFQREQNLQLHRRGH 117 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + LOC_Os02g45054.2 172 WKCDKCSKRYAVQSDWKAHSKIC 194 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 94 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.76E-8 | 94 | 117 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.0E-5 | 95 | 117 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.7E-5 | 160 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.76E-8 | 167 | 192 | No hit | No description |
SMART | SM00355 | 140 | 172 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ 60 AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP 120 WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR 180 YAVQSDWKAH SKICGTREYR CDCGTLFSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-22 | 168 | 209 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 8e-22 | 168 | 209 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17568 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990226 | 0.0 | ||||
Expression Atlas | Q6EU15 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g45054.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g45054 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120603 | 0.0 | AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626115.1 | 1e-154 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626116.1 | 1e-154 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626117.1 | 1e-154 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626118.1 | 1e-154 | protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q8GYC1 | 2e-89 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q9SCQ6 | 9e-90 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0D3F8R4 | 1e-154 | A0A0D3F8R4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YWA5 | 1e-153 | A0A0D9YWA5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GB50 | 1e-153 | A0A0E0GB50_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ25 | 1e-153 | A0A0E0NJ25_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AGE9 | 1e-153 | B8AGE9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6EU15 | 1e-153 | Q6EU15_ORYSJ; Finger protein pcp1-like | ||||
STRING | OGLUM02G28000.1 | 1e-154 | (Oryza glumipatula) | ||||
STRING | ORUFI02G28900.1 | 1e-154 | (Oryza rufipogon) | ||||
STRING | OS02T0672100-01 | 1e-154 | (Oryza sativa) | ||||
STRING | ONIVA02G30280.1 | 1e-154 | (Oryza nivara) | ||||
STRING | OBART02G27440.1 | 1e-155 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 4e-89 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g45054.2 |
Entrez Gene | 4330280 |
Publications ? help Back to Top | |||
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