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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g44120.1 | ||||||||
Common Name | LOC4330215, OJ1112_F09.36, Os02g0659100, OsJ_07812, OSNPB_020659100, P0708H12.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 620aa MW: 65668.4 Da PI: 6.3266 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 119 | 136 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H LOC_Os02g44120.1 119 TCENCGKEFTSWKTLLDH 136 6***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.8E-5 | 36 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.92E-6 | 37 | 59 | No hit | No description |
PROSITE profile | PS50157 | 8.704 | 37 | 59 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.2 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.92E-6 | 113 | 138 | No hit | No description |
PROSITE profile | PS50157 | 8.621 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 118 | 138 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.96E-8 | 295 | 318 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 296 | 323 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 296 | 318 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.0E-9 | 296 | 320 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 298 | 318 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.96E-8 | 427 | 454 | No hit | No description |
Pfam | PF13912 | 1.9E-12 | 431 | 455 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 432 | 454 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 432 | 454 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 434 | 454 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG 60 IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC 120 ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEEEE EGDDLTLAAG 180 GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSSS SRVAQPAIVV 240 DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA 300 CKKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH 360 VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS 420 AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM 480 CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL 540 QSWTGHSNGS HVNKTTATSS RINDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP 600 WLQVGIGISS ESKEKNTQE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55137 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992768 | 0.0 | ||||
Expression Atlas | Q6H672 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g44120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g44120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107559 | 0.0 | AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence. | |||
GenBank | AP005072 | 0.0 | AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12. | |||
GenBank | AP005289 | 0.0 | AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624902.1 | 0.0 | uncharacterized protein LOC4330215 | ||||
TrEMBL | Q6H672 | 0.0 | Q6H672_ORYSJ; Os02g0659100 protein | ||||
STRING | OS02T0659100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 3e-12 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g44120.1 |
Entrez Gene | 4330215 |