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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g43150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 432aa MW: 45060.8 Da PI: 8.501 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.1 | 2.9e-19 | 350 | 384 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l LOC_Os02g43150.1 350 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 384 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.4E-18 | 344 | 398 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.308 | 344 | 380 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.71E-14 | 344 | 405 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 348 | 382 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.16E-14 | 349 | 391 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 350 | 375 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.0E-17 | 350 | 384 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MTHQALIPST PPSAFSPASH FLHASSSSSP SLSSHAVVAT AAAAMSSFAH HHHGSLVEKD 60 GRMSALRSSL RPYEAAEEMA AAAAAGGPAA AWGAVERGAG MMGDGFSVED LLDLEELCEV 120 DRDGGEQGEA AAAAAAAVEK ERSSDSHGSS VVSYEPMPLL PPVMDLPAHD VEELEWVSRI 180 MDDSLAELPL PQLPAAAAAL AACGKPQHRR PHEGAASALL DPMRTPTICA LSTEALVPVK 240 SRRSKRSRAS VWSLSGAPLS DSTSSSSTAT TSSCSSSASF SPFLQYVDFP ALVASDLLDE 300 QPRSKKSKHG KNGKQKPKKR GRKPKHQQPP HLAAAAGGGA ALPATGDRRC SHCGVQKTPQ 360 WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTFVSSL HSNSHRKVLE MRRKKETPVI 420 VAAAAPAVAS F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27182 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994686 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g43150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g43150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109477 | 0.0 | AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623357.1 | 0.0 | GATA transcription factor 6 | ||||
TrEMBL | Q6H635 | 0.0 | Q6H635_ORYSJ; GATA transcription factor | ||||
STRING | OS02T0645600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-39 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g43150.1 |