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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g39710.1 | ||||||||
Common Name | LOC4329950, OJ1476_F05.18, Os02g0610500, OSNPB_020610500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CO-like | ||||||||
Protein Properties | Length: 333aa MW: 34952.9 Da PI: 4.9272 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.3 | 1.6e-08 | 30 | 67 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ ++ + ++l+C+ ++ +lC+ C H g H LOC_Os02g39710.1 30 RACDSCGGEAARLYCRADGAFLCARCDARAH-GagsrHA 67 57**************************999.4466675 PP | |||||||
2 | zf-B_box | 22.9 | 1.8e-07 | 69 | 113 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p LOC_Os02g39710.1 69 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 113 679*****************************6688888898877 PP | |||||||
3 | CCT | 70.4 | 4.5e-24 | 261 | 304 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ LOC_Os02g39710.1 261 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 304 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 27 | 71 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.4E-9 | 27 | 71 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.51E-10 | 30 | 71 | No hit | No description |
Pfam | PF00643 | 9.0E-7 | 31 | 67 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 67 | 114 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.9E-6 | 69 | 114 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-9 | 72 | 114 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.7E-18 | 261 | 303 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.916 | 261 | 303 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEAVEDKAMV GVGGAVAAGY SSSSWGLGTR ACDSCGGEAA RLYCRADGAF LCARCDARAH 60 GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGP 120 LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA 180 DTGAYLGVDL DFARSMDGIK AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA 240 LSAGSAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF 300 AKRTADADDD DEAPCSPAFS ALAASDGVVP SF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15757 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32968554 | 0.0 | ||||
Expression Atlas | Q6K9C5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g39710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g39710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100097 | 0.0 | AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625855.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0E0NHM5 | 0.0 | A0A0E0NHM5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6K9C5 | 0.0 | Q6K9C5_ORYSJ; Os02g0610500 protein | ||||
STRING | ORUFI02G25130.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0610500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 1e-41 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g39710.1 |
Entrez Gene | 4329950 |