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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g36360.3 | ||||||||
Common Name | LOC4329736, Os02g0572900, OSJNBb0046L23.5, OSNPB_020572900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 385aa MW: 40393.5 Da PI: 7.0355 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.5e-07 | 174 | 195 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H LOC_Os02g36360.3 174 FCDICGKGFRRDANLRMHMRAH 195 6*******************99 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 259 | 283 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + LOC_Os02g36360.3 259 YACERCGgkKRFAVLADLRSHLRHC 283 89********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.24E-6 | 170 | 195 | No hit | No description |
SMART | SM00355 | 0.0019 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 173 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-6 | 175 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 73 | 221 | 254 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 17 | 259 | 282 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL 60 RLVALGDRMA AVRRRIAASI SGESGPLSSS DIHSVSSEIS SAAHLVVLNA ASLLSSTVAS 120 LPAPPPPPAT TVQELPPVVV SVPQEPPQEA AKGDGDYDVV ELDASELLAE HVHFCDICGK 180 GFRRDANLRM HMRAHGDRFK TLDALSRPGQ PKPPAGREVR FSCPYAGCNR NRAHRRFRPL 240 KSAVCARNHF RRSHCPKLYA CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCGTTFSRK 300 DKLFGHLALF EGHTPAIAEP NKGVATAAAE ASISMMEEGG VEANCDREED EEGGFDPKFF 360 QEWMEELRGG AVAPNWSAPS EAGH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5755 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981343 | 0.0 | ||||
Expression Atlas | Q6YXC5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g36360.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g36360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005699 | 0.0 | AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627485.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | Q6YXC5 | 0.0 | Q6YXC5_ORYSJ; Os02g0572900 protein | ||||
STRING | OS02T0572900-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 5e-70 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g36360.3 |
Entrez Gene | 4329736 |