PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g35690.1
Common NameLOC4329700, Os02g0565000, OsJ_07175, OSNPB_020565000, P0020C11.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 420aa    MW: 44438.7 Da    PI: 6.525
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g35690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.6e-1564145286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+   +       ++pyf++l+
  LOC_Os02g35690.1  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 145
                       *************************************87889988664334**************99998886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2362146No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKQP KSDVQCKNRI  120
DTLKKKYKVE KAKPDSSWPY FHRLDTLLAP VHKPAGAYPA AAAAGAAGAG NSGSNSAAAA  180
TAARSTAPMA PRVNFPQRTR TQFLPSSGVK RRMPSPPQVS ASSESSDGFP PEPPMAAANG  240
KRRREVEEEV NGADSGHRTQ GLRELAQAIR RFGEVYERVE LAKREQELRM ERDRLEAARE  300
LEDQRVQFFL KMQMELSKAN NAGASAAAAA VGAVATAIAA ADGNGTRRTA MATDVGTSSN  360
HHVRYRFQDS RHCHAAPQQP QHQYNENNAA EAARGTGNGS DTDNKEDEDE AEDEEDESQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180210.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379902880.0
Expression AtlasQ6Z7E6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g35690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g35690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048650.0AP004865.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0020C11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.10.0trihelix transcription factor ASIL1
TrEMBLQ6Z7E60.0Q6Z7E6_ORYSJ; Os02g0565000 protein
STRINGOS02T0565000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-31sequence-specific DNA binding transcription factors