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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g34370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 36037.6 Da PI: 7.442 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.5 | 9.7e-08 | 94 | 118 | 7 | 31 |
HHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 7 erErrRRdriNsafeeLrellPkas 31 rEr RR+r+N+ f+ +r+l+P+++ LOC_Os02g34370.1 94 VRERERRRRMNDMFAGIRRLVPNLP 118 59*********************64 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-7 | 85 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 93 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-5 | 95 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGAESDGDD DDVVIVDACN NGKRKVGDGE 60 EEGRGSQGGD DDDDVVAVHG GGGGGGNRAC MFAVRERERR RRMNDMFAGI RRLVPNLPEK 120 GEEVRMEAQK QELQRERDRL AMEVAAAAGG AGASSSSSSA AAAAVTVAAY GPAGAVGSSS 180 SSAAAAARAN TVVPVPQRAA RGATAPTPRP VAPPQAGTWP LPAPAAMPPP PPPPTGAAAV 240 APPPSLKTWS WGDNVVVSVL GNIGNMTVRA PLRRTGVLAM ASAALKRYNI TAVTSLSGTD 300 ASRTQNMFMF YTIIDMPDRQ PQFVHPKVFE AMYRAAAAEI AAWINCY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.81397 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g34370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g34370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005611 | 0.0 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878834.1 | 0.0 | uncharacterized protein LOC107276567 isoform X2 | ||||
TrEMBL | A0A0E0NG77 | 1e-156 | A0A0E0NG77_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G21080.1 | 1e-156 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18142 | 7 | 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g34370.1 |