PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g33770.1
Common NameLOC4329598, Os02g0542400, OsJ_07059, OSNPB_020542400, P0472F10.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 411aa    MW: 46666.8 Da    PI: 6.7534
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g33770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.35.7e-2096194185
          trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                       +W   +v++L+ a+ +++e++  +              ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++ 
  LOC_Os02g33770.1  96 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHP 188
                       799************8888877542334467778888899*******************************************9548888777 PP

          trihelix  80 pyfdql 85 
                        +++ +
  LOC_Os02g33770.1 189 ELLEGM 194
                       776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1994220No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGNLPPRGA LVHGHGGGVG AFDLEATMQP PPPFHFAQDP HLHHHQGMVP VRGNPMLDLG  60
NVVKTSPSDE EDVDDGHHHG GGGGSGKEAS QWHRVKWISG MVKLLVSAVA YIDEDVDMDY  120
GTGSAARRKH AMLKRKGKWR LVSAAMTERG FPVSPQQCED KFNDLNKRYK RMTEILGRGT  180
ACQVVEHPEL LEGMRLSGKL KEEARKHLNS KHLHYEEMCS YHNRNKMCLF DDPALQKSLR  240
LALRSGEEHA KKNPFGYDDE DFSDDDDEDE EFDDLEVSAE DHHHGIHGAK RLKHDQEETH  300
FGSNLSEVAV IDMNKMLSEG SGGPTAEKSP STPGMRDIRL EKRRLKIKAQ MLKIEQKHFK  360
WLRFSKEKDR ELEKMRLENE KMKLENERLE LELKLKEIEM GIKPKKIFSD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.88370.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329754150.0
Expression AtlasQ6ESZ1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g33770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g33770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048770.0AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627648.10.0uncharacterized protein LOC4329598
TrEMBLA0A0D3F6500.0A0A0D3F650_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HYL50.0A0A0E0HYL5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NG470.0A0A0E0NG47_ORYRU; Uncharacterized protein
TrEMBLA2X5U20.0A2X5U2_ORYSI; Uncharacterized protein
TrEMBLQ6ESZ10.0Q6ESZ1_ORYSJ; Os02g0542400 protein
STRINGORUFI02G20760.10.0(Oryza rufipogon)
STRINGOS02T0542400-010.0(Oryza sativa)
STRINGONIVA07G07200.10.0(Oryza nivara)
STRINGOBART02G19680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Representative plantOGRP1303645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-63sequence-specific DNA binding transcription factors