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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g33560.1 | ||||||||
Common Name | LOC4329583, Os02g0538900, OSJNBa0014M17.21, OSNPB_020538900, P0508B05.42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 327aa MW: 35245.6 Da PI: 7.7028 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.7 | 8.8e-07 | 190 | 239 | 14 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + +rsR RK+++i+ Le+ v++L++ +L+ ++ +l ++ +l +e+ LOC_Os02g33560.1 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMEN 239 67889***************************999999999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14703 | 6.74E-16 | 189 | 233 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.4E-7 | 190 | 251 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSEDPFVG EPPCWLDDLL ADSGKSHTLP 60 PLRRACSDSD AILDVLTSFQ SPIYPIDEGD PQPVGEAGES FNAAAEGGGS GAGIEGSCVY 120 GPNSPRQKTR LTSSESSMVN AVLENVPSNP LQYLMIDATS GVNCNVGAAN GTGDTGDAVC 180 HADQEKSLKR RSGQRSRVRK LQYIADLERT VDSLQNIGAD LAVRVASLFQ LRNALSMENK 240 QLRRQITSLQ QAKLIKDGQT QMLKKETERL KQLSVRHRRS RSVTSCFEAN SFGGGDPSAI 300 NWQMLDMSKL SLNGGAVVPP RGGYGM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 195 | RRSGQRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49660 | 0.0 | callus| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ER85 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g33560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g33560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063644 | 0.0 | AK063644.1 Oryza sativa Japonica Group cDNA clone:001-118-H05, full insert sequence. | |||
GenBank | HQ324808 | 0.0 | HQ324808.1 Oryza sativa Japonica Group clone KCS608G03 b-zip protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623493.1 | 0.0 | basic leucine zipper 34 | ||||
TrEMBL | Q6ER85 | 0.0 | Q6ER85_ORYSJ; B-zip protein | ||||
STRING | OS02T0538900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8137 | 26 | 31 | Representative plant | OGRP9737 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 5e-18 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g33560.1 |
Entrez Gene | 4329583 |