PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g31160.1
Common NameOs02g0516800, OSJNBa0004O05.2, OSJNBb0071O21.27
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 375aa    MW: 39550.6 Da    PI: 4.8825
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g31160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.5e-2428140186
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                       rWt+qe+l+Lie++r +e r + +                            + +p+W++v++++r++g+er+++qC+++w+nl+++ykkike
  LOC_Os02g31160.1  28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKE 120
                       8**************999988843224557778888999999999999999888*************************************** PP

          trihelix  67 gekkrtsessstcpyfdqle 86 
                       +e+  ++ +  + p f  ++
  LOC_Os02g31160.1 121 WERAAAAAAPPREPSFWAMR 140
                       ****9988888889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-52840IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-578111IPR009057Homeodomain-like
PfamPF138378.8E-983124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSTAGDPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA  60
AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE  120
WERAAAAAAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV SPSGGGNAAA  180
GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEEDDDEAPP  240
ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPTTQQ QQGGQKRRRA  300
DDDEEEEDDG RRGGELQSKL VEILDRSSRM VAAQLEAQNA NSRLDREQRR DQAASLAVVL  360
GRLADALGRI ADKL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ67UM4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g31160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g31160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054970.0AP005497.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0071O21.
GenBankAP0072530.0AP007253.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623609.10.0trihelix transcription factor ASR3
TrEMBLQ67UM40.0Q67UM4_ORYSJ; Gt-2-related-like
STRINGONIVA02G19960.11e-143(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-44Trihelix family protein