PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g25820.1
Common NameLOC9271162, Os02g0455800, OsJ_06608, OSJNBa0008C07.35, OSJNBa0063K04.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 268aa    MW: 29359.8 Da    PI: 8.8957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g25820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1629125194
                       EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                       f+k l+psd  ++  +l +p ++++++g        ++led++g             + W +++  +k+ g + ltkGW+ Fv+++gLk+gD+
  LOC_Os02g25820.1  29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDT 111
                       89*******9988799********9997........888888888888888889999*******..*************************** PP

                       EEEEE-SSSEE..EE CS
                B3  80 vvFkldgrsefelvv 94 
                       + F + g+ +++l++
  LOC_Os02g25820.1 112 ISFFR-GSACGRLFI 125
                       **984.336665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1824137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1827126IPR015300DNA-binding pseudobarrel domain
CDDcd100178.56E-1928128No hitNo description
SMARTSM010191.1E-729130IPR003340B3 DNA binding domain
PfamPF023623.3E-1329126IPR003340B3 DNA binding domain
PROSITE profilePS5086310.67330131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE  60
DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC  120
GRLFICCRLG THATFASSST LHHGFSMPPP PARPLVGLQS GMLARDVPSL GQARLHDGNQ  180
DGGGAPSRHV PSSGRRVEAQ LSRVSSRRQR RTMKHSIPEP TIETPPILES MFLIAAPPAV  240
KCLRLFGVNI YVLPVSSSGQ PKQESSP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.709850.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160120530.0
Expression AtlasQ6K3B2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g25820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g25820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.10.0B3 domain-containing protein Os02g0455800
SwissprotQ6K3B20.0Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA0A0E0NEE50.0A0A0E0NEE5_ORYRU; Uncharacterized protein
STRINGORUFI02G16010.10.0(Oryza rufipogon)
STRINGOS02T0455800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Representative plantOGRP1446623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-18B3 family protein