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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g18460.1 | ||||||||
Common Name | OJ1115_D03.26, Os02g0285900, OSNPB_020285900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 504aa MW: 56826.6 Da PI: 3.8303 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.3 | 6.5e-15 | 10 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 l pGf+F+P+d+ lv +L + + + +l++ +++ + + + Pw L ++ +++e+e yf ++ g r+ r ++ g W ++ LOC_Os02g18460.1 10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQR 100 579**********************9988866432444331146679****73444445558888887765..56889999788899**9776 PP NAM 88 k..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 + + ev+++ +++ + +L f++ ++++g +t Wvmhey LOC_Os02g18460.1 101 SegKGEVVVApgGEAFLWENFSLNFHRDDRRSG-STGWVMHEYI 143 522334444444555588899*****8777776.9********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-25 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.919 | 10 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-11 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVFVEDDHL GGLPLPPWIL 60 LDRHGRGDED EAYFVAPMGA GDGARQVRSV AGGGKWVKQR SEGKGEVVVA PGGEAFLWEN 120 FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV 180 LDDAVPPAAA AAAPPPESEQ SNQEEQEYAA YTDQIQQQCF VPEQQMSNQE YFPEAAAEQS 240 NQQFFVPAEE QSSHQLFLPA EEQSNQQFFM PAEEQSSHQF LPAEEQSSHQ FLPAEEQSNY 300 QQFLPALEQM TQSNQEFAYG EQSQCYIVPE QQQLSNQEYA YSEQSQCYIL PEQQQLSDQE 360 YAYSEQSQCY ILPEQQELSN QEAEYAFVCY DEQQQQQQQS NQEAEYAFAC YDEQQQQQQQ 420 QYLHGDLTSW QEPFVTSSSS SSQQFLGQEQ LLPDGLLLDG FGEISQQQGD QEYAYCEESQ 480 CYIMPEQQQQ SNQEAEFAFA CYD* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6KA60 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g18460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g18460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004001 | 0.0 | AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6KA60 | 0.0 | Q6KA60_ORYSJ; Os02g0285900 protein | ||||
STRING | OS02T0285900-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14326 | 11 | 23 | Representative plant | OGRP14465 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-08 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g18460.1 |