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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g16680.2 | ||||||||
Common Name | LOC4328963, Os02g0266800, OsJ_06179, OSNPB_020266800, P0006C08.38 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 298aa MW: 31674.1 Da PI: 5.0307 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.5 | 1.1e-16 | 141 | 192 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++ LOC_Os02g16680.2 141 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 192 79**************************************9995554...44443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-17 | 138 | 202 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.185 | 140 | 192 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-14 | 141 | 190 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.94E-13 | 141 | 193 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-13 | 142 | 193 | No hit | No description |
CDD | cd14702 | 2.42E-23 | 143 | 193 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 145 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MKKCPSELNF EAFFHGERGE DDADAAADQK PGGGPHPPPF AMFSAADLSS FGFADSVTST 60 ITGVIPNHIW PQSQSLNARH PAVYTIESQS SICAASPTSA TTLNMKESQT LGGTSGSDSD 120 SESLLDIEGG PCEQSTNPLD VKRMRRMVSN RESARRSRKR KQAHLADLET QVDQLRGENA 180 SLFKQLTDAN QQFTTAVTDN RILKSDVEAL RVKVKMAEDM VARGALSCGL GHLGGLSPAL 240 NPRQGACRVP DVLTGLDYAG DDPFTGLSPP EQVQMPGGGE VGDAWGWDNH SNGAMSK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRSRKRK |
2 | 154 | 161 | RRSRKRKQ |
3 | 156 | 161 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49514 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 556408 | 0.0 | ||||
Expression Atlas | Q6ETX0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g16680.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g16680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070674 | 0.0 | AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence. | |||
GenBank | RICRITA1A | 0.0 | L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625527.1 | 0.0 | bZIP transcription factor RISBZ3-like isoform X2 | ||||
Swissprot | Q6ETX0 | 0.0 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
TrEMBL | B8AFB8 | 0.0 | B8AFB8_ORYSI; Uncharacterized protein | ||||
STRING | OS02T0266800-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-39 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g16680.2 |
Entrez Gene | 4328963 |
Publications ? help Back to Top | |||
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