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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g09650.1 | ||||||||
Common Name | LOC4328564, OJ1145_F01.32, Os02g0189600, OSJNBb0031B09.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21092.6 Da PI: 8.2356 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 15 | 65 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp k++r++lg++++ae+Aa+a++aa+++l+g+ LOC_Os02g09650.1 15 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTYDSAEDAARAYDAAARALRGA 65 69*******.**********83...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 15 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-17 | 15 | 74 | No hit | No description |
SMART | SM00380 | 1.7E-36 | 15 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 15 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 15 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-22 | 15 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-10 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARV WLGTYDSAED AARAYDAAAR 60 ALRGAKAKTN FPLSLPHAQP QLHHHHHHHL TYPAAAVVAA RPATSSLSST VESFGTRPRP 120 VLPPRPPPPP PIPDGDCRSD CGSSASVVDD DCADAAASPS CRLPFQFDLN LPPGGGGGGG 180 GGFGCAYDDE ELRLTALRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 11 | 75 | 1 | 66 | ATERF1 |
3gcc_A | 3e-21 | 11 | 75 | 1 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100127 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116640101 | 0.0 | ||||
Expression Atlas | Q6YUU8 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g09650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g09650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004046 | 0.0 | AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01. | |||
GenBank | AP005849 | 0.0 | AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879040.1 | 1e-141 | ethylene-responsive transcription factor 3 | ||||
Swissprot | O80339 | 2e-32 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | I1NY24 | 1e-139 | I1NY24_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6YUU8 | 1e-139 | Q6YUU8_ORYSJ; Os02g0189600 protein | ||||
STRING | ORGLA02G0063000.1 | 1e-140 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-12 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g09650.1 |
Entrez Gene | 4328564 |
Publications ? help Back to Top | |||
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