PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g07800.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 436aa    MW: 46239.9 Da    PI: 4.1757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g07800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.93e-0971149171
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71 
                       +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++        r rg  r + +C+ +we l+ +y  ++++e ++
  LOC_Os02g07800.1  71 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 149
                       5*******************************************9999999**********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92272136IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA RLRRGAEPPS  60
PRRTRSGGAP EWTPAETLAL VAEVAAVDDG WSRSVSAFQK WAIVAENLAA SRGRAARGRG  120
RGRAASECRR RWEALAAEYG VVRRWEVRGA GGYWRMSAAA RRKAGLPADF DAEVYGAMEA  180
LTLVEEALLA DATAGAGGAE IGEKSAAAAE VGEGDEVEAG EEDGNGDRGE VGEEDEGEVG  240
EDGEEEDGNE MVEVEDDGNA DDKDAQPDGG NAAASDDLGM QGQHMSSSLN SISTYWYLSK  300
DEVCETGANN EGKKSQTDAC ELANKLQENA QHIHMLLKEE AGENENHNLA ISSDSMETTR  360
QKGDELIKSL GGLVSYLNQF TDLIKENGFE NVVGLWQTLL PALASPFLSA IVYFSVWQSA  420
VLGRFSALYS RIPGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113123RAARGRGRGRA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975986750.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g07800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g07800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057720.0AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626063.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLI1NXR00.0I1NXR0_ORYGL; Uncharacterized protein
STRINGORGLA02G0051600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Representative plantOGRP74821314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-11sequence-specific DNA binding transcription factors