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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g03580.1 | ||||||||
Common Name | LOC4328173, Os02g0128200, OsJ_05225, OSNPB_020128200, P0482F12.32, P0576F08.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 348aa MW: 37079.4 Da PI: 5.5717 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.4 | 1.2e-21 | 244 | 306 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL ++++L aeN++L+ ele++kke+++l s++ LOC_Os02g03580.1 244 ERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 306 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.3E-29 | 1 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.2E-20 | 123 | 226 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-15 | 242 | 303 | No hit | No description |
SMART | SM00338 | 1.8E-18 | 244 | 308 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-19 | 244 | 306 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.794 | 246 | 309 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.38E-10 | 247 | 304 | No hit | No description |
CDD | cd14702 | 5.36E-25 | 249 | 299 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 251 | 266 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGTNDPGTPS KATKASEPEQ SPATTSGTTA PVYPEWPGFQ AYSAIPPHGF FPPPVAASPQ 60 AHPYMWGAQP MVPPYGTPPP YMMYPPGTVY AHPSTPGVHP FNHYPMLANG NVETAGTAPG 120 ASEINGKNEL GRTSGPSANG ITSHSESGSE SESEGSDANS QNDSHSKEND VKEDGSSQNG 180 ISHTALNQNM SMAPTQTGVV IGGVAPTTNL NIGMDYWGAA GSSPVPAMHG KASSGSVRGE 240 QWDERELKKQ KRKQSNRESA RRSRLRKQAE CEELSVRADN LRAENSSLRA ELERIKKEYE 300 ALLSHNASLK EKLEGNSDSI PYMNEQNDTN GTHQKQQDSD AQPNDAP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 266 | RRSRLRK |
2 | 260 | 267 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26491 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988564 | 0.0 | ||||
Expression Atlas | Q6Z2L2 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g03580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g03580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111901 | 0.0 | AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence. | |||
GenBank | AK112009 | 0.0 | AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626323.1 | 0.0 | transcription factor HBP-1a | ||||
Refseq | XP_015626324.1 | 0.0 | transcription factor HBP-1a | ||||
Swissprot | P23922 | 1e-148 | HBP1A_WHEAT; Transcription factor HBP-1a | ||||
TrEMBL | B8AH00 | 0.0 | B8AH00_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6Z2L2 | 0.0 | Q6Z2L2_ORYSJ; Os02g0128200 protein | ||||
STRING | OS02T0128200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2147 | 37 | 96 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 1e-58 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g03580.1 |
Entrez Gene | 4328173 |
Publications ? help Back to Top | |||
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