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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g02480.1 | ||||||||
Common Name | LOC4328080, OJ1442_E05.19, Os02g0116600, OsJ_05121, OSNPB_020116600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25593 Da PI: 4.9237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 70 | 117 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL +++ ++ ++ Kl+Ka iL A + + +L LOC_Os02g02480.1 70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117 6789***********************...**************9887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-13 | 59 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.252 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-8 | 69 | 122 | No hit | No description |
Pfam | PF00010 | 7.0E-9 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-12 | 71 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-7 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR 60 DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE 120 AEKLKESNEK LRETIKDLKV EKNELRDEKV TLKAEKERLE QQVKALSVAP TGFVPHLPHP 180 AAFHPAAFPP FIPPYQALGN KNAPTPAAFQ GMAMWQWLPP TAVDTTQDPK LWPPNA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17893 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988643 | 0.0 | ||||
Expression Atlas | Q6ZGM4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g02480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g02480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060881 | 0.0 | AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence. | |||
GenBank | AK103434 | 0.0 | AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence. | |||
GenBank | AK104188 | 0.0 | AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence. | |||
GenBank | EU837263 | 0.0 | EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626366.1 | 1e-172 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 6e-54 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0D3EZT6 | 1e-171 | A0A0D3EZT6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YLC1 | 1e-171 | A0A0D9YLC1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G048 | 1e-171 | A0A0E0G048_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N8V4 | 1e-171 | A0A0E0N8V4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X043 | 1e-171 | A2X043_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NWK6 | 1e-171 | I1NWK6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6ZGM4 | 1e-171 | Q6ZGM4_ORYSJ; BHLH transcription factor | ||||
STRING | OGLUM02G01100.1 | 1e-172 | (Oryza glumipatula) | ||||
STRING | ORUFI02G01220.1 | 1e-172 | (Oryza rufipogon) | ||||
STRING | OS02T0116600-01 | 1e-172 | (Oryza sativa) | ||||
STRING | ONIVA02G01100.1 | 1e-172 | (Oryza nivara) | ||||
STRING | ORGLA02G0011200.1 | 1e-172 | (Oryza glaberrima) | ||||
STRING | OBART02G01220.1 | 1e-172 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g02480.1 |
Entrez Gene | 4328080 |