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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74440.1 | ||||||||
Common Name | LOC107275406, Os01g0975800, OsJ_04958, OSNPB_010975800, P0459B04.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 22916.3 Da PI: 10.7204 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 24 | 71 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y + LOC_Os01g74440.1 24 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 71 8*******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-26 | 15 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.156 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-30 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-39 | 16 | 91 | No hit | No description |
PRINTS | PR00404 | 3.3E-20 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-25 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-20 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-20 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAMQVAAPSR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV 60 VFSPAGKAYS FGHPSVECLL ERFLPDSSSG AAARVRRGAN NNGGGGMVGE LNRQYGELRA 120 MVEAHKARRE RADEKIEMER AAGRWLPMDA DVRRMSPEEL MAFGTGLMAV QAAVSARADQ 180 MLRDALLIGR RPPTTTTAGF GFFHMPHY* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q94CT0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003627 | 0.0 | AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640475.1 | 1e-151 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0D3EZB4 | 1e-149 | A0A0D3EZB4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A2WZN3 | 1e-149 | A2WZN3_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NVQ9 | 1e-149 | I1NVQ9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q94CT0 | 1e-149 | Q94CT0_ORYSJ; MADS-box protein-like | ||||
STRING | OS01T0975800-00 | 1e-150 | (Oryza sativa) | ||||
STRING | ORGLA01G0394900.1 | 1e-150 | (Oryza glaberrima) | ||||
STRING | OBART01G45740.1 | 1e-150 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-26 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74440.1 |
Entrez Gene | 107275406 |