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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g74140.1 | ||||||||
Common Name | LOC4326396, Os01g0972800, OsJ_04935, OSNPB_010972800, P0518C01.36, P0698H10.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 411aa MW: 45109.9 Da PI: 4.6849 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.5e-31 | 160 | 216 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h LOC_Os01g74140.1 160 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 216 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.164 | 154 | 219 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-29 | 157 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 158 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-36 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 160 | 216 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDGAMQESRE YWRDGGDVVG EELLREILDE TAAVHSNSNS NSNSNSNSKE AEEEDEREYF 60 AAAAADEQLQ VEAPCGRRRR ESMVNKLIST VYSGPTISDI ESALSFTAAG DHQLLADGHN 120 FAASSCSPVV FSPEKTLSKT MENKYTLKMK SCGNNGGLAD DGYKWRKYGQ KSIKNSPNPR 180 SYYRCTNPRC NAKKQVERAV DEPDTLIVTY EGLHLHYTYS HFLHSTSSSS SSTTTQQQLQ 240 PQPQMMTNCK KKPKLHLHPL LHDDPPPPPP PPEMTTMMIM QSFSIQQQQH DDDQLLQPAA 300 DDHLMVQAPP DDCYNINGSS SSGLMMSLDD DEQAAGAGGL LEDVVPLLVR RPPPPICNNN 360 NYYYSPATTC TSDNEYGSSA SASPSSSVSV SSWTTPMSPC IDMAILSNIF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 158 | 216 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 158 | 216 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519171 | 0.0 | ||||
Expression Atlas | Q5JM93 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g74140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g74140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110625 | 0.0 | AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence. | |||
GenBank | AY341842 | 0.0 | AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds. | |||
GenBank | AY870605 | 0.0 | AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641374.1 | 0.0 | probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0E0N874 | 0.0 | A0A0E0N874_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5JM93 | 0.0 | Q5JM93_ORYSJ; Os01g0972800 protein | ||||
STRING | ORUFI01G49010.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0972800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 9e-41 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g74140.1 |
Entrez Gene | 4326396 |