PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g70230.1
Common NameP0482D04.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 299aa    MW: 31551.3 Da    PI: 8.0911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g70230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.58.8e-242394171
          trihelix  1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                      rWt++e+l+L++arr me+r rr+ +    +W++vs ++r++g+er+p qC+++w nl+++ kki ++ek+ 
  LOC_Os01g70230.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSTYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
                      8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9691681IPR017877Myb-like domain
SuperFamilySSF466895.65E-52083IPR009057Homeodomain-like
PfamPF138374.0E-102391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSTY  60
CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR  120
LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP  180
LMVMPISATV SAKRGGAASD KNSTSQHDGG GGGGLKDSEA TYGAGVGGEE GTTTATATAT  240
TTSIGRQVIE ALERGNRMLG DQLEAQRAAW DAEREQRVAL LAAVDKLAGA VCRIADKL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8S1X2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g70230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g70230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032620.0AP003262.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482D04.
GenBankAP0043320.0AP004332.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.10.0trihelix transcription factor ASR3
TrEMBLQ8S1X20.0Q8S1X2_ORYSJ; p0482D04.22 protein
STRINGORGLA04G0277700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-43Trihelix family protein