![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g68860.1 | ||||||||
Common Name | LOC4324354, Os01g0917400, P0413C03.19-1, P0413C03.19-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 440aa MW: 47852.2 Da PI: 8.6646 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 82 | 107 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+F+H++ LOC_Os01g68860.1 82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107 6899********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 127 | 152 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ LOC_Os01g68860.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152 5799********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.1e-12 | 174 | 198 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ LOC_Os01g68860.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 334 | 359 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ LOC_Os01g68860.1 334 DQPECQYYMKTGDCKFGAVCKFHHPR 359 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 379 | 404 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ LOC_Os01g68860.1 379 PGEELCKFYSRYGICKFGANCKFDHP 404 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.352 | 80 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-5 | 80 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-8 | 82 | 107 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 85 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 86 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 127 | 152 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 131 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 172 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 174 | 198 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 177 | 197 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 334 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 338 | 358 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 378 | 406 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 378 | 405 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 380 | 404 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 380 | 405 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 382 | 403 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 440 aa Download sequence Send to blast |
MDDAGRASAP AVVTVTASAA APTPPLPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM 60 WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG 120 EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY 180 LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPYTGTMA SWAFPRGSFI 240 PSPRWQNPSN YAPMIVPQGL VQVPSWNSYT GQMMPVSSSE SRLQSPGAQQ TYGTSQQVDA 300 SAGNQGMLSP YRSSSYPVPQ YALQRENVFP ERPDQPECQY YMKTGDCKFG AVCKFHHPRV 360 RSMPTPDCVL SPVGLPLRPG EELCKFYSRY GICKFGANCK FDHPTMAPPM GVYAYGSAST 420 NVPMVRRLLQ SPSASAYTS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.19086 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37988765 | 0.0 | ||||
Expression Atlas | Q5JLB5 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g68860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g68860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK098948 | 0.0 | AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622340.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | H6BEJ8 | 0.0 | H6BEJ8_ORYSI; CCCH-type zinc finger protein | ||||
STRING | OS01T0917400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-147 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g68860.1 |
Entrez Gene | 4324354 |
Publications ? help Back to Top | |||
---|---|---|---|
|