![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g66290.1 | ||||||||
Common Name | LOC4324888, MADS21, Os01g0886200, OsJ_04337, P0408G07.26, P0434C04.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 29393.1 Da PI: 8.6212 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.8 | 3.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+EL +LCdae+a+i+fss+g+lye+s+ LOC_Os01g66290.1 9 KRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 108.5 | 7.6e-36 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + +++ qqe+ak++ +i++Lq+ +Rhl+Ge++++++ keL++Le++Lek++++iRskK+ell+++ie++qk+e +lq+en+ Lr+k++e LOC_Os01g66290.1 84 IDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAE 175 566889***********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.305 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.23E-44 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 9.29E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-28 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.814 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRGKIEIKR IENKTSRQVT FCKRRNGLLK KAYELAILCD AEIALIVFSS RGRLYEFSNV 60 NSTRSTIERY KKASASTSGS APVIDVNSHQ YFQQEAAKMR HQIQTLQNAN RHLIGESIGN 120 MTAKELKSLE NRLEKGISRI RSKKHELLFS EIEYMQKREA DLQNENMFLR AKVAEAERAE 180 HDDQQAAEDD EMAPAPAVGG GSSSGTELEA LPATFDTREY YQPAPPVSML AAAAAAAAAQ 240 YSSDHHQTAL HLGYFKVDSG KGGLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.28021 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32980981 | 0.0 | ||||
Expression Atlas | Q8RU31 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g66290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g66290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK070958 | 0.0 | AK070958.1 Oryza sativa Japonica Group cDNA clone:J023065L09, full insert sequence. | |||
GenBank | AY551913 | 0.0 | AY551913.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS207 mRNA, complete cds. | |||
GenBank | FJ750944 | 0.0 | FJ750944.1 Oryza sativa clone KCS020C02 MADS-box transcription factor 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621182.1 | 0.0 | MADS-box transcription factor 21 | ||||
Swissprot | Q8RU31 | 0.0 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A2WXQ4 | 0.0 | A2WXQ4_ORYSI; Uncharacterized protein | ||||
TrEMBL | D3U2H6 | 0.0 | D3U2H6_ORYSA; MADS-box transcription factor 21 | ||||
STRING | OS01T0886200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42830.1 | 9e-86 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g66290.1 |
Entrez Gene | 4324888 |
Publications ? help Back to Top | |||
---|---|---|---|
|