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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g65080.3 | ||||||||
Common Name | LOC4324940, Os01g0871200, OsJ_04239, OSJNBb0008G24.8, P0039A07.24-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 523aa MW: 57147.1 Da PI: 5.7446 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.7 | 2.2e-06 | 283 | 304 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H LOC_Os01g65080.3 283 FCLICGKGFKRDANLRMHMRGH 304 5*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.76E-5 | 280 | 308 | No hit | No description |
SMART | SM00355 | 0.012 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.552 | 282 | 309 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.1E-5 | 284 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 68 | 331 | 364 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 369 | 391 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDSGLGRSSE TSLKALPSMA SNATRNTDPD QQGVRFSSMD QPPCFARPGQ SFPAFPPLFG 60 VQSSSLYLPD DIEAKIGNQF ESNPSPNNPT MDWDPQAMLS NLSFLEQKIK QVKDIVQSMS 120 NRESQVAGGS SEAQAKQQLV TADLTCIIIQ LISTAGSLLP SMKNPISSNP ALRHLSNTLC 180 APMILGTNCN LRPSANDEAT IPDISKTHDY EELMNSLNTT QAESDEMMNC QNPCGGEGSE 240 PIPMEDHDVK ESDDGGEREN LPPGSYVVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH 300 MRGHGDEYKT AAALAKPSKD SSLESAPVTR YSCPYVGCKR NKEHKKFQPL KTILCVKNHY 360 KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG 420 HTPALPMDDI KVTGASEQPQ GSEAMNTMVG SAGYNFPGSS SDDIPNLDMK MADDPRYFSP 480 LSFDPCFGGL DDFTRPGFDI SENPFSFLPS GSCSFGQQNG DS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8796 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986049 | 0.0 | ||||
Expression Atlas | Q943I6 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g65080.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g65080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072211 | 0.0 | AK072211.1 Oryza sativa Japonica Group cDNA clone:J013161E15, full insert sequence. | |||
GenBank | AK072417 | 0.0 | AK072417.1 Oryza sativa Japonica Group cDNA clone:J023085P15, full insert sequence. | |||
GenBank | AK100840 | 0.0 | AK100840.1 Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence. | |||
GenBank | AP003235 | 0.0 | AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07. | |||
GenBank | AP003566 | 0.0 | AP003566.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641300.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Refseq | XP_015641307.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | F1DK81 | 0.0 | F1DK81_ORYSI; C2H2 transcription factor (Fragment) | ||||
STRING | OS01T0871200-03 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-158 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g65080.3 |
Entrez Gene | 4324940 |
Publications ? help Back to Top | |||
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