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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g64590.1 | ||||||||
Common Name | LOC4324797, Os01g0865800, OSNPB_010865800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 321aa MW: 33781.5 Da PI: 4.5088 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.5e-38 | 23 | 80 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ LOC_Os01g64590.1 23 AAPNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 80 5679***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 7 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-32 | 24 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MLPYAPRPPS LLVDRRYKQG AEAAPNCPRC DSPNTKFCYY NNYSLSQPRY FCKGCRRYWT 60 KGGSLRNVPV GGGCRKNRRG KSSSSARSAA DAVSSGRDAA FGHRFPGPVR PDMVLEGMVG 120 NPANPGQAMP DVAAAADGST IDLAMLYAKF LNHPPTDAGL GAVTPESGGH VDEAFDTFSA 180 SSDLSPGILA AASAQFDPNQ DGFGEWSSPA SGNDPTSTAT TATTSMLCTD ASVQAALGEL 240 NFAMDQSCFD SLGLPTDVAG AGSLSSWCSI VPSLSTWEEP KYDSLDSFPD DAMSLHECMI 300 GAPDHDWSVD CQGLEALYMP * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12398 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0VAX4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g64590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g64590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003270 | 0.0 | AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646108.1 | 0.0 | dof zinc finger protein 4-like | ||||
TrEMBL | A0A0E0FW46 | 0.0 | A0A0E0FW46_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N5H1 | 0.0 | A0A0E0N5H1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0VAX4 | 0.0 | A0A0P0VAX4_ORYSJ; Os01g0865800 protein | ||||
STRING | ORUFI01G41780.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0865800-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G43090.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g64590.1 |
Entrez Gene | 4324797 |