PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64360.1
Common NameLOC4324783, OsJ_04166
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 174aa    MW: 19318.5 Da    PI: 8.4787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-081563147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      r +W++ Ed+ +  a  + + +   +W+++a+ ++ gRt+ +  +++q +
  LOC_Os01g64360.1 15 RRPWSKVEDKVFESALVLCPEDvpdRWALVAAQLP-GRTPQEALEHYQVL 63
                      679********************************.******99999976 PP
2Myb_DNA-binding41.33.6e-13106150347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W+++E+ l++++  ++G g+W+ I+r    +Rt+ q+ s+ qky
  LOC_Os01g64360.1 106 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 150
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.4671068IPR017930Myb domain
SuperFamilySSF466891.29E-101263IPR009057Homeodomain-like
SMARTSM007175.0E-61466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-61562IPR009057Homeodomain-like
PfamPF002492.3E-61562IPR001005SANT/Myb domain
CDDcd001671.82E-51764No hitNo description
PROSITE profilePS5129418.86699155IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-10100156IPR009057Homeodomain-like
SuperFamilySSF466895.02E-17101155IPR009057Homeodomain-like
SMARTSM007173.3E-10103153IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-16103154IPR006447Myb domain, plants
PfamPF002498.9E-11106150IPR001005SANT/Myb domain
CDDcd001675.85E-10106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDLYGAAAGG GPVARRPWSK VEDKVFESAL VLCPEDVPDR WALVAAQLPG RTPQEALEHY  60
QVLVADIDLI MRGAVDAPGS WDDNDGNDRR GGGGKPRGEE RRRGVPWSED EHRLFLEGLD  120
RYGRGDWRNI SRFSVRTRTP TQVASHAQKY FIRQANAGAR DSKRKSIHDI TTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1616105990RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.497871e-130flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882341e-130
Expression AtlasA2ZZU5-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2628330.0KM262833.1 Oryza sativa Indica Group cultivar Nagina 22 MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622460.11e-124transcription factor DIVARICATA
SwissprotQ8S9H72e-48DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0N5F11e-123A0A0E0N5F1_ORYRU; Uncharacterized protein
TrEMBLA2ZZU51e-123A2ZZU5_ORYSJ; Uncharacterized protein
STRINGORUFI01G41590.11e-124(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-44MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]